IL_9FCO_008

3D structure

PDB id

9FCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E. coli 30S-IF1-IF3-mRNA-Kasugamycin complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAA*UGC

Length

7 nucleotides

Bulged bases

9FCO|1|B|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FCO_008 not in the Motif Atlas

Homologous match to IL_5J7L_009

Geometric discrepancy: 0.0714

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

9FCO|1|B|G|128
9FCO|1|B|A|129
9FCO|1|B|A|130
9FCO|1|B|A|131
*
9FCO|1|B|U|231
9FCO|1|B|G|232
9FCO|1|B|C|233

Current chains

Chain B

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain Q

Small ribosomal subunit protein uS17

Chain T

Small ribosomal subunit protein bS20