IL_9FCO_011

3D structure

PDB id

9FCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E. coli 30S-IF1-IF3-mRNA-Kasugamycin complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9FCO|1|B|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FCO_011 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.0673

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

9FCO|1|B|G|147
9FCO|1|B|G|148
9FCO|1|B|A|149
9FCO|1|B|U|150
9FCO|1|B|A|151
9FCO|1|B|A|152
9FCO|1|B|C|153
*
9FCO|1|B|G|168
9FCO|1|B|C|169
9FCO|1|B|U|170
9FCO|1|B|A|171
9FCO|1|B|A|172
9FCO|1|B|U|173
9FCO|1|B|A|174
9FCO|1|B|C|175

Current chains

Chain B

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20