IL_9FCO_012

3D structure

PDB id

9FCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E. coli 30S-IF1-IF3-mRNA-Kasugamycin complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

9FCO|1|B|U|244, 9FCO|1|B|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FCO_012 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0687

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

9FCO|1|B|G|242
9FCO|1|B|A|243
9FCO|1|B|U|244
9FCO|1|B|U|245
9FCO|1|B|A|246
9FCO|1|B|G|247
*
9FCO|1|B|C|277
9FCO|1|B|G|278
9FCO|1|B|A|279
9FCO|1|B|C|280
9FCO|1|B|G|281
9FCO|1|B|A|282
9FCO|1|B|U|283
9FCO|1|B|C|284

Current chains

Chain B

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS17