IL_9FCO_023
3D structure
- PDB id
- 9FCO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E. coli 30S-IF1-IF3-mRNA-Kasugamycin complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9FCO|1|B|A|532, 9FCO|1|B|U|534, 9FCO|1|B|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9FCO_023 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.2487
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9FCO|1|B|G|515
9FCO|1|B|PSU|516
9FCO|1|B|G|517
9FCO|1|B|C|518
9FCO|1|B|C|519
9FCO|1|B|A|520
9FCO|1|B|G|521
*
9FCO|1|B|C|528
9FCO|1|B|G|529
9FCO|1|B|G|530
9FCO|1|B|U|531
9FCO|1|B|A|532
9FCO|1|B|A|533
9FCO|1|B|U|534
9FCO|1|B|A|535
9FCO|1|B|C|536
Current chains
- Chain B
- 16S rRNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS4
- Chain I
- Translation initiation factor IF-1
- Chain L
- Small ribosomal subunit protein uS12
Coloring options: