IL_9FCO_045

3D structure

PDB id

9FCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E. coli 30S-IF1-IF3-mRNA-Kasugamycin complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGGG*UUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FCO_045 not in the Motif Atlas

Geometric match to IL_5UNE_005

Geometric discrepancy: 0.2782

The information below is about IL_5UNE_005

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9FCO|1|B|U|1420
9FCO|1|B|G|1421
9FCO|1|B|G|1422
9FCO|1|B|G|1423
*
9FCO|1|B|U|1477
9FCO|1|B|U|1478
9FCO|1|B|C|1479
9FCO|1|B|A|1480

Current chains

Chain B

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12