IL_9FDA_012

3D structure

PDB id

9FDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9FDA|1|B|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FDA_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.0659

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

9FDA|1|B|G|147
9FDA|1|B|G|148
9FDA|1|B|A|149
9FDA|1|B|U|150
9FDA|1|B|A|151
9FDA|1|B|A|152
9FDA|1|B|C|153
*
9FDA|1|B|G|168
9FDA|1|B|C|169
9FDA|1|B|U|170
9FDA|1|B|A|171
9FDA|1|B|A|172
9FDA|1|B|U|173
9FDA|1|B|A|174
9FDA|1|B|C|175

Current chains

Chain B

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20