3D structure

PDB id
9FDA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2 Å

Loop

Sequence
GAUUAG*CGACGAUC
Length
14 nucleotides
Bulged bases
9FDA|1|B|U|244, 9FDA|1|B|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9FDA_013 not in the Motif Atlas
Homologous match to IL_4LFB_011
Geometric discrepancy: 0.0949
The information below is about IL_4LFB_011
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

9FDA|1|B|G|242
9FDA|1|B|A|243
9FDA|1|B|U|244
9FDA|1|B|U|245
9FDA|1|B|A|246
9FDA|1|B|G|247
*
9FDA|1|B|C|277
9FDA|1|B|G|278
9FDA|1|B|A|279
9FDA|1|B|C|280
9FDA|1|B|G|281
9FDA|1|B|A|282
9FDA|1|B|U|283
9FDA|1|B|C|284

Current chains

Chain B
16S rRNA

Nearby chains

Chain L
Small ribosomal subunit protein uS12
Chain Q
Small ribosomal subunit protein uS17

Coloring options:


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