IL_9FDA_022

3D structure

PDB id

9FDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FDA_022 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.0599

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

9FDA|1|B|G|450
9FDA|1|B|A|451
9FDA|1|B|A|452
9FDA|1|B|G|453
9FDA|1|B|G|454
9FDA|1|B|G|455
*
9FDA|1|B|C|477
9FDA|1|B|A|478
9FDA|1|B|U|479
9FDA|1|B|U|480
9FDA|1|B|G|481
9FDA|1|B|A|482
9FDA|1|B|C|483

Current chains

Chain B

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16