IL_9FDA_023
3D structure
- PDB id
- 9FDA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- CGGCUAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9FDA_023 not in the Motif Atlas
- Homologous match to IL_4LFB_020
- Geometric discrepancy: 0.046
- The information below is about IL_4LFB_020
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
9FDA|1|B|C|504
9FDA|1|B|G|505
9FDA|1|B|G|506
9FDA|1|B|C|507
9FDA|1|B|U|508
9FDA|1|B|A|509
9FDA|1|B|A|510
9FDA|1|B|C|511
*
9FDA|1|B|G|540
9FDA|1|B|G|541
Current chains
- Chain B
- 16S rRNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS4
- Chain L
- Small ribosomal subunit protein uS12
Coloring options: