IL_9FDA_025

3D structure

PDB id

9FDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9FDA|1|B|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FDA_025 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.0805

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

9FDA|1|B|C|569
9FDA|1|B|G|570
9FDA|1|B|U|571
9FDA|1|B|A|572
9FDA|1|B|A|573
9FDA|1|B|A|574
9FDA|1|B|G|575
*
9FDA|1|B|C|880
9FDA|1|B|G|881

Current chains

Chain B

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS17