3D structure

PDB id
9FDA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2 Å

Loop

Sequence
G(4OC)CC*G(UR3)AAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9FDA_041 not in the Motif Atlas
Homologous match to IL_5J7L_059
Geometric discrepancy: 0.1139
The information below is about IL_5J7L_059
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65718.4
Basepair signature
cWW-cSH-cWS-cWW-cWW
Number of instances in this motif group
4

Unit IDs

9FDA|1|B|G|1401
9FDA|1|B|4OC|1402
9FDA|1|B|C|1403
9FDA|1|B|C|1404
*
9FDA|1|B|G|1497
9FDA|1|B|UR3|1498
9FDA|1|B|A|1499
9FDA|1|B|A|1500
9FDA|1|B|C|1501

Current chains

Chain B
16S rRNA

Nearby chains

Chain J
Translation initiation factor IF-3

Coloring options:


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