IL_9FDA_044
3D structure
- PDB id
- 9FDA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- CAC*GUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9FDA_044 not in the Motif Atlas
- Geometric match to IL_8P9A_394
- Geometric discrepancy: 0.28
- The information below is about IL_8P9A_394
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.6
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 51
Unit IDs
9FDA|1|B|C|1409
9FDA|1|B|A|1410
9FDA|1|B|C|1411
*
9FDA|1|B|G|1489
9FDA|1|B|U|1490
9FDA|1|B|G|1491
Current chains
- Chain B
- 16S rRNA
Nearby chains
- Chain I
- Translation initiation factor IF-1
- Chain J
- Translation initiation factor IF-3
- Chain L
- Small ribosomal subunit protein uS12
Coloring options: