3D structure

PDB id
9FDA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2 Å

Loop

Sequence
CAUG*UGGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9FDA_045 not in the Motif Atlas
Geometric match to IL_5J7L_283
Geometric discrepancy: 0.2277
The information below is about IL_5J7L_283
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

9FDA|1|B|C|1412
9FDA|1|B|A|1413
9FDA|1|B|U|1414
9FDA|1|B|G|1415
*
9FDA|1|B|U|1485
9FDA|1|B|G|1486
9FDA|1|B|G|1487
9FDA|1|B|G|1488

Current chains

Chain B
16S rRNA

Nearby chains

Chain L
Small ribosomal subunit protein uS12

Coloring options:


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