IL_9FDA_045

3D structure

PDB id

9FDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CAUG*UGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FDA_045 not in the Motif Atlas

Geometric match to IL_5J7L_283

Geometric discrepancy: 0.2277

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9FDA|1|B|C|1412
9FDA|1|B|A|1413
9FDA|1|B|U|1414
9FDA|1|B|G|1415
*
9FDA|1|B|U|1485
9FDA|1|B|G|1486
9FDA|1|B|G|1487
9FDA|1|B|G|1488

Current chains

Chain B

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12