IL_9FIA_002

3D structure

PDB id

9FIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU(body) structure derived from the SSU sample of the mitoribosome from T. gondii.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

AAC*GU

Length

5 nucleotides

Bulged bases

9FIA|1|b2|A|27

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FIA_002 not in the Motif Atlas

Geometric match to IL_8VTW_047

Geometric discrepancy: 0.2337

The information below is about IL_8VTW_047

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

9FIA|1|b2|A|26
9FIA|1|b2|A|27
9FIA|1|b2|C|28
*
9FIA|1|bN|G|52
9FIA|1|bN|U|53

Current chains

Chain b2

SSUE

Chain bN

SSUB

Nearby chains

Chain B4

CHCH domain-containing protein

Chain HJ

30S ribosomal protein S5, putative

Chain HS

Acylphosphatase-like domain-containing protein

Chain bT

SSUF