IL_9FIA_008

3D structure

PDB id

9FIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU(body) structure derived from the SSU sample of the mitoribosome from T. gondii.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

UUC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FIA_008 not in the Motif Atlas

Geometric match to IL_5TBW_027

Geometric discrepancy: 0.1336

The information below is about IL_5TBW_027

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

9FIA|1|bE|U|28
9FIA|1|bE|U|29
9FIA|1|bE|C|30
*
9FIA|1|bO|G|104
9FIA|1|bO|C|105
9FIA|1|bO|G|106

Current chains

Chain bE

RNA8

Chain bO

SSUA

Nearby chains

Chain BA

Mitochondrial ribosomal protein, mS137

Chain BI

unidentified peptide

Chain BO

Putative 30S ribosomal protein S15