IL_9FIA_011
3D structure
- PDB id
- 9FIA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SSU(body) structure derived from the SSU sample of the mitoribosome from T. gondii.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.29 Å
Loop
- Sequence
- GAU*AGU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9FIA_011 not in the Motif Atlas
- Geometric match to IL_8C3A_045
- Geometric discrepancy: 0.2852
- The information below is about IL_8C3A_045
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
9FIA|1|bT|G|26
9FIA|1|bT|A|27
9FIA|1|bT|U|28
*
9FIA|1|bT|A|37
9FIA|1|bT|G|38
9FIA|1|bT|U|39
Current chains
- Chain bT
- SSUF
Nearby chains
- Chain BA
- Mitochondrial ribosomal protein, mS137
- Chain BI
- unidentified peptide
- Chain BS
- Ribosomal protein, bS21m
- Chain Be
- unidentified peptide
- Chain Bj
- unidentified peptide
- Chain bE
- RNA8
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