IL_9FIB_009

3D structure

PDB id

9FIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FIB_009 not in the Motif Atlas

Homologous match to IL_5J7L_010

Geometric discrepancy: 0.0598

The information below is about IL_5J7L_010

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

9FIB|1|B|C|132
9FIB|1|B|U|133
9FIB|1|B|G|134
9FIB|1|B|C|135
9FIB|1|B|C|136
*
9FIB|1|B|G|227
9FIB|1|B|A|228
9FIB|1|B|U|229
9FIB|1|B|G|230

Current chains

Chain B

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20