IL_9FIB_018

3D structure

PDB id

9FIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGAAGAA*UGUAAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FIB_018 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1148

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9FIB|1|B|U|409
9FIB|1|B|G|410
9FIB|1|B|A|411
9FIB|1|B|A|412
9FIB|1|B|G|413
9FIB|1|B|A|414
9FIB|1|B|A|415
*
9FIB|1|B|U|427
9FIB|1|B|G|428
9FIB|1|B|U|429
9FIB|1|B|A|430
9FIB|1|B|A|431
9FIB|1|B|A|432
9FIB|1|B|G|433

Current chains

Chain B

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4