IL_9FIB_020

3D structure

PDB id

9FIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

9FIB|1|B|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FIB_020 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.1838

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9FIB|1|B|G|446
9FIB|1|B|G|447
9FIB|1|B|A|448
9FIB|1|B|G|449
9FIB|1|B|G|450
*
9FIB|1|B|C|483
9FIB|1|B|G|484
9FIB|1|B|U|485
9FIB|1|B|U|486
9FIB|1|B|A|487
9FIB|1|B|C|488

Current chains

Chain B

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain P

Small ribosomal subunit protein bS16