IL_9FIB_036

3D structure

PDB id

9FIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

9FIB|1|B|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FIB_036 not in the Motif Atlas

Homologous match to IL_4LFB_035

Geometric discrepancy: 0.0674

The information below is about IL_4LFB_035

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9FIB|1|B|G|922
9FIB|1|B|A|923
*
9FIB|1|B|U|1393
9FIB|1|B|A|1394
9FIB|1|B|C|1395

Current chains

Chain B

16S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5