IL_9FIB_039

3D structure

PDB id

9FIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FIB_039 not in the Motif Atlas

Geometric match to IL_8CRE_467

Geometric discrepancy: 0.23

The information below is about IL_8CRE_467

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9FIB|1|B|G|1401
9FIB|1|B|4OC|1402
9FIB|1|B|C|1403
9FIB|1|B|C|1404
*
9FIB|1|B|G|1497
9FIB|1|B|UR3|1498
9FIB|1|B|A|1499
9FIB|1|B|A|1500
9FIB|1|B|C|1501

Current chains

Chain B

16S rRNA

Nearby chains

Chain J

Translation initiation factor IF-3

Chain Y

mRNA