IL_9FMD_004

3D structure

PDB id

9FMD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Integrative model of the human post-catalytic spliceosome (P-complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCAUA*UCC

Length

8 nucleotides

Bulged bases

9FMD|1|5|C|25

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FMD|1|5|G|24
9FMD|1|5|C|25
9FMD|1|5|A|26
9FMD|1|5|U|27
9FMD|1|5|A|28
*
9FMD|1|5|U|54
9FMD|1|5|C|55
9FMD|1|5|C|56

Current chains

Chain 5

U5 snRNA

Nearby chains

Chain A

Pre-mRNA-processing-splicing factor 8

Chain C

116 kDa U5 small nuclear ribonucleoprotein component

Chain P

Spliceosome-associated protein CWC15 homolog

Chain R

SNW domain-containing protein 1