IL_9FQZ_021

3D structure

PDB id

9FQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES BOUND TO EEF2, EBP1, AND SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

9FQZ|1|L5|G|483

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FQZ_021 not in the Motif Atlas

Geometric match to IL_1U9S_008

Geometric discrepancy: 0.3564

The information below is about IL_1U9S_008

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

9FQZ|1|L5|G|482
9FQZ|1|L5|G|483
9FQZ|1|L5|U|484
9FQZ|1|L5|C|485
*
9FQZ|1|L5|G|671
9FQZ|1|L5|C|672

Current chains

Chain L5

LSU rRNA

Nearby chains

Chain Lr

60S ribosomal protein L28