IL_9FQZ_072

3D structure

PDB id

9FQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES BOUND TO EEF2, EBP1, AND SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

9FQZ|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FQZ_072 not in the Motif Atlas

Homologous match to IL_8GLP_082

Geometric discrepancy: 0.2077

The information below is about IL_8GLP_082

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.4

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

5

Unit IDs

9FQZ|1|L5|U|1957
9FQZ|1|L5|A|1958
9FQZ|1|L5|U|1959
9FQZ|1|L5|A|1960
9FQZ|1|L5|G|1961
9FQZ|1|L5|A|1962
9FQZ|1|L5|C|1963
9FQZ|1|L5|A|1964
9FQZ|1|L5|G|1965
*
9FQZ|1|L5|C|2022
9FQZ|1|L5|C|2023
9FQZ|1|L5|G|2024
9FQZ|1|L5|A|2025
9FQZ|1|L5|A|2026

Current chains

Chain L5

LSU rRNA

Nearby chains

Chain Lm

Ubiquitin-60S ribosomal protein L40

Chain Lq

60S acidic ribosomal protein P0