IL_9G06_014

3D structure

PDB id

9G06 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-fMet-tRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GG*UGACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G06_014 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.0607

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

9G06|1|B|G|292
9G06|1|B|G|293
*
9G06|1|B|U|304
9G06|1|B|G|305
9G06|1|B|A|306
9G06|1|B|C|307
9G06|1|B|C|308

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16