IL_9G06_018

3D structure

PDB id

9G06 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-fMet-tRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

UGAAGAA*UGUAAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G06_018 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1148

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9G06|1|B|U|409
9G06|1|B|G|410
9G06|1|B|A|411
9G06|1|B|A|412
9G06|1|B|G|413
9G06|1|B|A|414
9G06|1|B|A|415
*
9G06|1|B|U|427
9G06|1|B|G|428
9G06|1|B|U|429
9G06|1|B|A|430
9G06|1|B|A|431
9G06|1|B|A|432
9G06|1|B|G|433

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4