IL_9G06_050

3D structure

PDB id

9G06 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-fMet-tRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G06_050 not in the Motif Atlas

Geometric match to IL_5J7L_053

Geometric discrepancy: 0.1051

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

9G06|1|B|C|1158
9G06|1|B|U|1159
9G06|1|B|G|1160
9G06|1|B|C|1161
*
9G06|1|B|G|1175
9G06|1|B|A|1176
9G06|1|B|G|1177
9G06|1|B|G|1178
9G06|1|B|A|1179
9G06|1|B|A|1180
9G06|1|B|G|1181

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain b

Small ribosomal subunit protein uS9