IL_9G06_056

3D structure

PDB id

9G06 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-fMet-tRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G06_056 not in the Motif Atlas

Geometric match to IL_8CRE_467

Geometric discrepancy: 0.2299

The information below is about IL_8CRE_467

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9G06|1|B|G|1401
9G06|1|B|4OC|1402
9G06|1|B|C|1403
9G06|1|B|C|1404
*
9G06|1|B|G|1497
9G06|1|B|UR3|1498
9G06|1|B|A|1499
9G06|1|B|A|1500
9G06|1|B|C|1501

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain J

Translation initiation factor IF-3

Chain L

Small ribosomal subunit protein uS12

Chain Y

mRNA