IL_9G1Z_006

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

9G1Z|1|1|U|146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_006 not in the Motif Atlas

Homologous match to IL_8CRE_007

Geometric discrepancy: 0.0489

The information below is about IL_8CRE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92634.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

9G1Z|1|1|A|122
9G1Z|1|1|U|123
*
9G1Z|1|1|A|143
9G1Z|1|1|G|144
9G1Z|1|1|U|145
9G1Z|1|1|U|146
9G1Z|1|1|G|147
9G1Z|1|1|U|148

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain p

60S ribosomal protein L8

Chain v

Ribosomal protein L15