IL_9G1Z_011

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CU*AUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_011 not in the Motif Atlas

Homologous match to IL_8CRE_012

Geometric discrepancy: 0.1139

The information below is about IL_8CRE_012

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

9G1Z|1|1|C|177
9G1Z|1|1|U|178
*
9G1Z|1|1|A|236
9G1Z|1|1|U|237
9G1Z|1|1|G|238

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain AI

Ribosomal 60S subunit protein L35A

Chain AK

Ribosomal protein L37

Chain t

60S ribosomal protein L13