IL_9G1Z_052
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 9G1Z|1|1|C|1192, 9G1Z|1|1|A|1298, 9G1Z|1|1|U|1301, 9G1Z|1|1|G|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G1Z_052 not in the Motif Atlas
- Homologous match to IL_8CRE_055
- Geometric discrepancy: 0.0563
- The information below is about IL_8CRE_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83149.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
9G1Z|1|1|G|1190
9G1Z|1|1|A|1191
9G1Z|1|1|C|1192
9G1Z|1|1|A|1193
9G1Z|1|1|C|1194
9G1Z|1|1|C|1195
9G1Z|1|1|A|1196
9G1Z|1|1|C|1197
9G1Z|1|1|A|1198
9G1Z|1|1|A|1199
9G1Z|1|1|A|1200
9G1Z|1|1|A|1201
*
9G1Z|1|1|U|1295
9G1Z|1|1|G|1296
9G1Z|1|1|A|1297
9G1Z|1|1|A|1298
9G1Z|1|1|A|1299
9G1Z|1|1|A|1300
9G1Z|1|1|U|1301
9G1Z|1|1|G|1302
9G1Z|1|1|G|1303
9G1Z|1|1|A|1304
9G1Z|1|1|U|1305
9G1Z|1|1|G|1306
9G1Z|1|1|G|1307
9G1Z|1|1|C|1308
9G1Z|1|1|G|1309
9G1Z|1|1|C|1310
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain AG
- Ribosomal 60S subunit protein L33A
- Chain AN
- Rpl40bp
- Chain k
- 60S ribosomal protein L3
- Chain o
- Ribosomal 60S subunit protein L7A
- Chain r
- Ribosomal 60S subunit protein L10
- Chain w
- Ribosomal 60S subunit protein L16A
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