IL_9G1Z_078

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_078 not in the Motif Atlas

Geometric match to IL_8P9A_304

Geometric discrepancy: 0.0767

The information below is about IL_8P9A_304

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

9G1Z|1|1|G|1894
9G1Z|1|1|G|1895
9G1Z|1|1|A|1896
9G1Z|1|1|A|1897
*
9G1Z|1|1|U|2314
9G1Z|1|1|C|2315

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 6

Ribosomal 60S subunit protein L23B

Chain k

60S ribosomal protein L3