IL_9G1Z_123

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUU*AACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_123 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.1664

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9G1Z|1|1|U|3138
9G1Z|1|1|U|3139
9G1Z|1|1|U|3140
9G1Z|1|1|U|3141
*
9G1Z|1|1|A|3244
9G1Z|1|1|A|3245
9G1Z|1|1|C|3246
9G1Z|1|1|A|3247

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AG

Ribosomal 60S subunit protein L33A