IL_9G1Z_138

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GUAG

Length

6 nucleotides

Bulged bases

9G1Z|1|3|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_138 not in the Motif Atlas

Homologous match to IL_8OI5_136

Geometric discrepancy: 0.0574

The information below is about IL_8OI5_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

9G1Z|1|3|C|28
9G1Z|1|3|C|29
*
9G1Z|1|3|G|49
9G1Z|1|3|U|50
9G1Z|1|3|A|51
9G1Z|1|3|G|52

Current chains

Chain 3

5S rRNA

Nearby chains

Chain m

Ribosomal 60S subunit protein L5

Chain s

Ribosomal 60S subunit protein L11B