IL_9G1Z_152

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_152 not in the Motif Atlas

Homologous match to IL_8P9A_380

Geometric discrepancy: 0.0852

The information below is about IL_8P9A_380

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9G1Z|1|A|G|109
9G1Z|1|A|U|110
9G1Z|1|A|U|111
9G1Z|1|A|A|112
*
9G1Z|1|A|U|300
9G1Z|1|A|U|301
9G1Z|1|A|U|302
9G1Z|1|A|C|303

Current chains

Chain A

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain J

40S ribosomal protein S8

Chain M

Ribosomal 40S subunit protein S11A