IL_9G1Z_155

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9G1Z|1|A|U|168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_155 not in the Motif Atlas

Homologous match to IL_8CRE_400

Geometric discrepancy: 0.1171

The information below is about IL_8CRE_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.1

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

9G1Z|1|A|G|141
9G1Z|1|A|G|142
9G1Z|1|A|A|143
9G1Z|1|A|U|144
9G1Z|1|A|A|145
9G1Z|1|A|A|146
9G1Z|1|A|C|147
*
9G1Z|1|A|G|163
9G1Z|1|A|C|164
9G1Z|1|A|U|165
9G1Z|1|A|A|166
9G1Z|1|A|A|167
9G1Z|1|A|U|168
9G1Z|1|A|A|169
9G1Z|1|A|C|170

Current chains

Chain A

18S rRNA

Nearby chains

Chain H

40S ribosomal protein S6

Chain Z

40S ribosomal protein S24