IL_9G1Z_158

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

9G1Z|1|A|U|258

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_158 not in the Motif Atlas

Homologous match to IL_8CRE_403

Geometric discrepancy: 0.1371

The information below is about IL_8CRE_403

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

9G1Z|1|A|G|202
9G1Z|1|A|U|203
9G1Z|1|A|A|204
*
9G1Z|1|A|U|257
9G1Z|1|A|U|258
9G1Z|1|A|U|259
9G1Z|1|A|U|260
9G1Z|1|A|C|261

Current chains

Chain A

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain J

40S ribosomal protein S8