IL_9G1Z_160

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAUC*GAU

Length

7 nucleotides

Bulged bases

9G1Z|1|A|A|264

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_160 not in the Motif Atlas

Homologous match to IL_8CRE_405

Geometric discrepancy: 0.0838

The information below is about IL_8CRE_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

9G1Z|1|A|A|263
9G1Z|1|A|A|264
9G1Z|1|A|U|265
9G1Z|1|A|C|266
*
9G1Z|1|A|G|285
9G1Z|1|A|A|286
9G1Z|1|A|U|287

Current chains

Chain A

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain H

40S ribosomal protein S6