IL_9G1Z_172

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACA*UU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_172 not in the Motif Atlas

Homologous match to IL_8CRE_420

Geometric discrepancy: 0.0995

The information below is about IL_8CRE_420

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

9G1Z|1|A|A|516
9G1Z|1|A|C|517
9G1Z|1|A|A|518
*
9G1Z|1|A|U|530
9G1Z|1|A|U|531

Current chains

Chain A

18S rRNA

Nearby chains

Chain K

Ribosomal 40S subunit protein S9B

Chain Z

40S ribosomal protein S24