IL_9G1Z_188
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G1Z_188 not in the Motif Atlas
- Homologous match to IL_8CRE_435
- Geometric discrepancy: 0.0618
- The information below is about IL_8CRE_435
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
9G1Z|1|A|G|870
9G1Z|1|A|U|871
9G1Z|1|A|A|872
9G1Z|1|A|U|873
*
9G1Z|1|A|A|909
9G1Z|1|A|G|910
9G1Z|1|A|A|911
9G1Z|1|A|C|912
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain C
- 40S ribosomal protein S1
- Chain P
- Small ribosomal subunit protein uS11
- Chain b
- 40S ribosomal protein S26
- Chain j
- Ribosomal 60S subunit protein L2A
Coloring options: