IL_9G33_004

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUCG*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G33_004 not in the Motif Atlas

Geometric match to IL_8OI5_102

Geometric discrepancy: 0.3492

The information below is about IL_8OI5_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71706.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9G33|1|D2|G|107
9G33|1|D2|U|108
9G33|1|D2|C|109
9G33|1|D2|G|110
*
9G33|1|D2|U|136
9G33|1|D2|C|137

Current chains

Chain D2

5' ETS

Nearby chains

Chain UE

U3 small nucleolar RNA-associated protein 5

Chain US

Nucleolar complex protein 4