IL_9G33_008

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AUUG*UUU

Length

7 nucleotides

Bulged bases

9G33|1|D2|U|176

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G33_008 not in the Motif Atlas

Geometric match to IL_8G9Z_001

Geometric discrepancy: 0.2065

The information below is about IL_8G9Z_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

9G33|1|D2|A|175
9G33|1|D2|U|176
9G33|1|D2|U|177
9G33|1|D2|G|178
*
9G33|1|D2|U|219
9G33|1|D2|U|220
9G33|1|D2|U|221

Current chains

Chain D2

5' ETS

Nearby chains

Chain UP

U3 small nucleolar RNA-associated protein 16