IL_9G33_010
3D structure
- PDB id
- 9G33 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stalled 90S - Utp23-Krr1-deltaC3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- GUC*GC
- Length
- 5 nucleotides
- Bulged bases
- 9G33|1|D2|U|239
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G33_010 not in the Motif Atlas
- Geometric match to IL_6JDV_003
- Geometric discrepancy: 0.3705
- The information below is about IL_6JDV_003
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 147
Unit IDs
9G33|1|D2|G|238
9G33|1|D2|U|239
9G33|1|D2|C|240
*
9G33|1|D2|G|273
9G33|1|D2|C|274
Current chains
- Chain D2
- 5' ETS
Nearby chains
- Chain D4
- U3 small nucleolar RNA; U3 snoRNA
- Chain DF
- 40S ribosomal protein S5
- Chain DQ
- 40S ribosomal protein S16-A
- Chain UK
- U3 small nucleolar RNA-associated protein 11
- Chain UO
- U3 small nucleolar RNA-associated protein 15
- Chain UR
- U3 small nucleolar RNA-associated protein 18
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