IL_9G33_011

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CG*UUG

Length

5 nucleotides

Bulged bases

9G33|1|D2|U|267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G33_011 not in the Motif Atlas

Geometric match to IL_2R8S_004

Geometric discrepancy: 0.3117

The information below is about IL_2R8S_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

9G33|1|D2|C|245
9G33|1|D2|G|246
*
9G33|1|D2|U|266
9G33|1|D2|U|267
9G33|1|D2|G|268

Current chains

Chain D2

5' ETS

Nearby chains

Chain CI

U3 small nucleolar ribonucleoprotein protein IMP3

Chain CL

Ribosome biogenesis protein BMS1

Chain DQ

40S ribosomal protein S16-A

Chain UK

U3 small nucleolar RNA-associated protein 11