IL_9G33_013

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GAAU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G33_013 not in the Motif Atlas

Geometric match to IL_4V9F_068

Geometric discrepancy: 0.2629

The information below is about IL_4V9F_068

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

9G33|1|D2|G|337
9G33|1|D2|A|338
9G33|1|D2|A|339
9G33|1|D2|U|340
*
9G33|1|D2|A|386
9G33|1|D2|C|387

Current chains

Chain D2

5' ETS

Nearby chains

Chain CI

U3 small nucleolar ribonucleoprotein protein IMP3

Chain JN

Protein FAF1

Chain UG

U3 small nucleolar RNA-associated protein 7

Chain UN

U3 small nucleolar RNA-associated protein 14