IL_9G33_019

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G33_019 not in the Motif Atlas

Geometric match to IL_4KZD_006

Geometric discrepancy: 0.1939

The information below is about IL_4KZD_006

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_77710.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

26

Unit IDs

9G33|1|D2|C|355
9G33|1|D2|C|356
*
9G33|1|D2|G|369
9G33|1|D2|U|370
9G33|1|D2|G|371

Current chains

Chain D2

5' ETS

Nearby chains

Chain UG

U3 small nucleolar RNA-associated protein 7