IL_9G33_025

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGC*GAGAG

Length

8 nucleotides

Bulged bases

9G33|1|D2|A|536

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G33_025 not in the Motif Atlas

Geometric match to IL_8P9A_315

Geometric discrepancy: 0.3285

The information below is about IL_8P9A_315

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70784.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

9G33|1|D2|C|501
9G33|1|D2|G|502
9G33|1|D2|C|503
*
9G33|1|D2|G|533
9G33|1|D2|A|534
9G33|1|D2|G|535
9G33|1|D2|A|536
9G33|1|D2|G|537

Current chains

Chain D2

5' ETS

Nearby chains

Chain CD

Nucleolar protein 56

Chain UF

U3 small nucleolar RNA-associated protein 6

Chain UN

U3 small nucleolar RNA-associated protein 14