IL_9G33_026

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GGU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G33_026 not in the Motif Atlas

Geometric match to IL_5DO5_003

Geometric discrepancy: 0.1023

The information below is about IL_5DO5_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9G33|1|D2|G|505
9G33|1|D2|G|506
9G33|1|D2|U|507
*
9G33|1|D2|A|529
9G33|1|D2|A|530
9G33|1|D2|C|531

Current chains

Chain D2

5' ETS

Nearby chains

Chain CD

Nucleolar protein 56

Chain UF

U3 small nucleolar RNA-associated protein 6

Chain UN

U3 small nucleolar RNA-associated protein 14