IL_9G33_038

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G33_038 not in the Motif Atlas

Geometric match to IL_6YL5_010

Geometric discrepancy: 0.2848

The information below is about IL_6YL5_010

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9G33|1|D3|C|186
9G33|1|D3|G|187
9G33|1|D3|A|188
9G33|1|D3|C|189
*
9G33|1|D3|G|196
9G33|1|D3|A|197
9G33|1|D3|A|198
9G33|1|D3|G|199

Current chains

Chain D3

18S rRNA

Nearby chains

Chain UT

U3 small nucleolar RNA-associated protein 20