IL_9G33_047

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CCAAU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G33_047 not in the Motif Atlas

Geometric match to IL_8P9A_397

Geometric discrepancy: 0.1252

The information below is about IL_8P9A_397

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26900.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

9G33|1|D3|C|443
9G33|1|D3|C|444
9G33|1|D3|A|445
9G33|1|D3|A|446
9G33|1|D3|U|447
*
9G33|1|D3|A|460
9G33|1|D3|G|461

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DY

40S ribosomal protein S24-A

Chain JE

U3 small nucleolar ribonucleoprotein protein LCP5